CALCULATION OF PARAMETERS

Use this option to calculate nucleotide composition, codon usage, codon usage per thousand and/or Relative Synonimous Codon Usage (RSCU) from DNA sequences.

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Insert your sequences in FASTA format

>gi|29345410:3460-3996 ATGGAAAATGGTATTGAAGAAATATTGAAAGAACATGAGGCACTGTGCAGCCGGGTATTTCATCTTCTGAATACAGGTAATCCGCAAACTAAGGATATAGAACTTATCATACCTAAAGTGAAAGAACTGTTCGGAATGCTGGAAGCCGTCAATACCAAACAAATCACTGCACAGCAATATAACGGCTTGCTGAATGTGATGAGTGAATGGAACGCTATTTTCAGCTATTTCAATATTAAGATGGTGCCGTGCCGTTTACGGCCTTTCTTATGGAACTCTCCAAAGGTAGCTGTAAAAAGAATACCCCGGCAATGTATCGAGGGGATAGTGGTAAGCACGAAAATGCAAAAGACGGTTGTCATAGAGGTGGAACGTACGAAAAAGCATCCGAAGTATGGGAAAACAGTACAATATACGAAAAAGTATAAAATACATGATCCCCTGGAGGAATGTAGTGTAGGAGACCGGGTGCTTGCTCATGAAACCAGACATTTCAGCAAGACTAAATATTTTAGATTTTACAGAAAACTGTATTGA >gi|29345410:512111-512308 ATGCCAAAGATGAAGACTAACTCCGGTTCTAAAAAAAGGTTTACCCTTACCGGAACAGGTAAAATCAAAAGAAAGCACGCTTTTCACAGTCACATTTTGACTAAGAAATCGAAAAAGAGAAAAAGAAATCTGTGCTACTCTACAACTGTTGATACAACAAATGTAAGCCAGGTTAAGGAACTCTTAGCAATGAAGTAA >gi|29345410:512408-512758 ATGCCAAGATCAGTAAATCATGTTGCTTCAAAAGCAAGAAGAAAGAAAATTTTGAAATTAACCAGAGGTTACTTTGGTGCAAGAAAAAATGTATGGACCGTAGCAAAAAACACCTGGGAAAAGGGTTTGACTTACGCGTTCCGTGACCGTAGAAATAAGAAAAGAAACTTCCGCGCTCTTTGGATACAACGTATCAACGCTGCTGCACGTCTTGAAGGAATGTCTTATTCTAAATTGATGGGCGGTTTGCACAAAGCCGGTATTGAAATAAATCGTAAGGTTTTGGCTGATTTAGCTATGAATCATCCGGAAGCTTTCAAAGCTGTAGTTGCTAAAGCAAAAGCTGCTTAA >gi|29345410:c1126784-1126596 ATGGCAAAGAAAGCAAAAGGTAACAGAGTACAGGTGATTCTGGAATGTACAGAACACAAAGAGAGTGGAATGCCGGGAACATCTCGCTATATCACAACTAAAAACAGAAAGAATACAACTGAAAGACTTGAGTTGAAGAAATACAACCCGATTCTGAAGAGAGTAACAGTACATAAGGAAATTAAATAA >gi|29345410:c1127066-1126806 ATGTCGAAGATTTGTCAAATTACCGGAAAGAAAGCCATGATTGGCAACAATGTTTCACACTCAAAGAGAAGAACAAAAAGAACCTTTGATTTGAACTTGTTTAACAAAAAGTTCTATTATGTAGAACAAGACTGTTGGATCAGCCTTAGCCTTTGTGCTAACGGTCTGCGTATCATCAACAAAAAAGGACTGGACGCTGCACTGAACGATGCAGTAGCTAAAGGTTTCTGTGATTGGAAAAGCATTAAAGTAATCGGCTAA >gi|29345410:1581041-1581595 ATGGCAACTAGAATCAGATTGCAAAGACACGGACGTAAAAGTTACGCGTTTTATTCAATTGTAATTGCAGACAGCAGAGCACCACGTGATGGTAAATTTATTGAGAAGATTGGTACTTACAACCCGAACACCAATCCTGCTACAGTAGATTTGAATTTCGACGCTGCATTGGCATGGGTACTGAAAGGTGCACAACCAAGTGACACTGTACGTAATATCCTTTCTCGTGAAGGTGTTTACATGAAGAAACATCTTCTTGGCGGTGTTGCAAAAGGCGCATTCGGAGAAGCAGAAGCAGAAGCTAAATTCGAAGCTTGGAAGAACAACAAACAGTCAGGTCTGGCTGCTTTGAAAGCTAAGCAAGACGAAGAAAAGAAAGCTGAAGCTAAAGCACGTCTGGAAGCAGAAAAGAAGATCAACGAAGTGAAAGCAAAAGCACTCGCTGAAAAGAAAGCTGCTGAAGCTGCTGAAAAAGCTGCTGCTGAAGCACCTGCAGAAGAAGCAACTGAAGCTCCGGCTGAAGAAGCTGCTGCAACAGAAGCTGCTGCTGAATAA >gi|29345410:2088036-2088290 ATGAAAAAAGGCCTTCATCCAGAATCATACCGTCCGGTAGTATTCAAAGATATGTCAAATGGTGATATGTTTTTGTCTAAATCAACTGTAGCAACTAAAGAAACCATCGAATTCGAAGGTGAAACTTATCCGTTGCTGAAGATTGAAATCTCTAACACTTCTCACCCGTTCTATACAGGTAAATCTACATTGGTAGATACTGCAGGTCGCGTTGATAAGTTCATGAGCCGTTACGGTGACCGTAAGAAGAAATAA

Choose the genetic code

1: Standard 2: Vertebrate Mitochondrial 3: Yeast Mitochondrial 4: Mold, Protozoan, Coelenterate Mitochondrial and Mycoplasma/Spiroplasma 5: Invertebrate Mitochondrial 6: Ciliate Macronuclear and Dasycladacean 9: Echinoderm Mitochondrial 10: Alternative Ciliate Macronuclear 11: Eubacterial 12: Alternative Yeast 13: Ascidian Mitochondrial 14: Flatworm Mitochondrial 15: Blepharisma Nuclear Code

Choose the output

Nucleotide composition     Codon usage     Codon usage per thousand     RSCU

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